DuneCopasi

WARNING: This repository is in an ongoing refactor for version 2.0, check out the releases for stable versions!

Solver for reaction-diffusion systems in multiple compartments

• Solve a different reaction-diffusion system for each comartment
• Custom fluxes between compartments
• Easy to modify configuration file
• Initial conditions can be a TIFF file and/or math expressions
• Using the finite element/finite volume method
• Output in the VTK format

Get started here.

Research funded by the German federal Ministry of Education and Research (BMBF) FKZ 031L0158