#include <local_equations.hh>

Inheritance diagram for Dune::Copasi::DiffusionReaction::LocalEquations< dim >:

Classes
struct	CompartmentDifferentiableFunction

struct	CompartmentDiffusionApply

struct	CompartmentNode

struct	CompartmentPartialDerivative

struct	MembraneDifferentiableFunction

struct	MembraneDiffusionApply

struct	MembraneNode

struct	MembranePartialDerivative

Public Types
using	CompartmentScalarFunction = CompartmentDifferentiableFunction< Scalar() const noexcept >

using	MembraneScalarFunction = MembraneDifferentiableFunction< Scalar() const noexcept >

using	CompartmentVectorFunction = CompartmentDifferentiableFunction< Vector() const noexcept >

using	MembraneVectorFunction = MembraneDifferentiableFunction< Vector() const noexcept >

Public Member Functions
	LocalEquations (const LocalEquations &)=delete

	LocalEquations (LocalEquations &&)=delete

virtual	~LocalEquations () override=default

LocalEquations &	operator= (const LocalEquations &)=delete

LocalEquations &	operator= (LocalEquations &&)=delete

template<class Tree > requires Concept::CompartmentScalarLocalBasisNode<Tree> \|\| Concept::MembraneScalarLocalBasisNode<Tree>
const auto &	get_equation (const Tree &tree) const

template<class Tree > requires Concept::CompartmentScalarLocalBasisNode<Tree> \|\| Concept::MembraneScalarLocalBasisNode<Tree>
auto &	get_value (const Tree &tree)

template<class Tree > requires Concept::CompartmentScalarLocalBasisNode<Tree> \|\| Concept::MembraneScalarLocalBasisNode<Tree>
auto &	get_gradient (const Tree &tree)

void	forEachValue (Codim< 0 >, const std::function< void(std::string_view, const FieldVector< double, 1 > &, const FieldVector< double, dim > &)> &apply) const override

void	forEachValue (Codim< 1 >, const std::function< void(std::string_view, const FieldVector< double, 1 > &, const FieldVector< double, dim - 1 > &)> &) const override

void	clear ()

void	debug () const

const auto &	nodes () const

Public Member Functions inherited from Dune::Copasi::LocalDomain< dim >
	LocalDomain ()=default

	LocalDomain (const LocalDomain &)=delete

	LocalDomain (LocalDomain &&)=delete

LocalDomain &	operator= (const LocalDomain &)=delete

LocalDomain &	operator= (LocalDomain &&)=delete

virtual	~LocalDomain ()

virtual void	forEachValue (Codim< 0 >, const std::function< void(std::string_view, const Dune::FieldVector< double, 1 > &, const Dune::FieldVector< double, dim > &)> &) const

virtual void	forEachValue (Codim< 1 >, const std::function< void(std::string_view, const FieldVector< double, 1 > &, const FieldVector< double, dim - 1 > &)> &) const

Static Public Member Functions
template<PDELab::Concept::LocalBasis LocalBasis, class CellDataGridView = typename LocalBasis::GlobalBasis::EntitySet, class CellDataType = double>
static std::unique_ptr< LocalEquations >	make (const LocalBasis &lbasis, const ParameterTree &eqs_cfg={}, const ParameterTree &domain_cfg={}, std::shared_ptr< const FunctorFactory< dim > > functor_factory=nullptr, std::shared_ptr< const CellData< CellDataGridView, CellDataType > > grid_cell_data=nullptr, BitFlags< FactoryFalgs > opts=BitFlags< FactoryFalgs >::no_flags())

template<class CellDataGridView , class CellDataType = double>
static std::unique_ptr< LocalEquations >	make_stiffness (const PDELab::Concept::LocalBasis auto &lbasis, const ParameterTree &eqs_cfg, const ParameterTree &domain_cfg, std::shared_ptr< const FunctorFactory< dim > > functor_factory, std::shared_ptr< const CellData< CellDataGridView, CellDataType > > grid_cell_data)

template<class CellDataGridView , class CellDataType = double>
static std::unique_ptr< LocalEquations >	make_mass (const PDELab::Concept::LocalBasis auto &lbasis, const ParameterTree &eqs_cfg, const ParameterTree &domain_cfg, std::shared_ptr< const FunctorFactory< dim > > functor_factory, std::shared_ptr< const CellData< CellDataGridView, CellDataType > > grid_cell_data)

Public Attributes
CompartmentVectorFunction	domain_deformation

Public Attributes inherited from Dune::Copasi::LocalDomain< dim >
FieldVector< double, dim >	position

FieldVector< double, dim >	normal

double	time = 0.

double	integration_factor = 0

double	entity_volume = 0.

double	in_volume = 0

double	in_boundary = 0

double	in_skeleton = 0

std::vector< double >	cell_values

std::vector< bool >	cell_mask

std::vector< std::string >	cell_keys

Member Typedef Documentation

◆ CompartmentScalarFunction

template<std::size_t dim>

using Dune::Copasi::DiffusionReaction::LocalEquations< dim >::CompartmentScalarFunction = CompartmentDifferentiableFunction<Scalar() const noexcept>

◆ CompartmentVectorFunction

template<std::size_t dim>

using Dune::Copasi::DiffusionReaction::LocalEquations< dim >::CompartmentVectorFunction = CompartmentDifferentiableFunction<Vector() const noexcept>

◆ MembraneScalarFunction

template<std::size_t dim>

using Dune::Copasi::DiffusionReaction::LocalEquations< dim >::MembraneScalarFunction = MembraneDifferentiableFunction<Scalar() const noexcept>

◆ MembraneVectorFunction

template<std::size_t dim>

using Dune::Copasi::DiffusionReaction::LocalEquations< dim >::MembraneVectorFunction = MembraneDifferentiableFunction<Vector() const noexcept>

Constructor & Destructor Documentation

◆ LocalEquations() [1/2]

template<std::size_t dim>

Dune::Copasi::DiffusionReaction::LocalEquations< dim >::LocalEquations ( const LocalEquations< dim > & )

delete

◆ LocalEquations() [2/2]

template<std::size_t dim>

Dune::Copasi::DiffusionReaction::LocalEquations< dim >::LocalEquations ( LocalEquations< dim > && )

delete

◆ ~LocalEquations()

template<std::size_t dim>

virtual Dune::Copasi::DiffusionReaction::LocalEquations< dim >::~LocalEquations ( )

overridevirtualdefault

Member Function Documentation

◆ clear()

template<std::size_t dim>

void Dune::Copasi::DiffusionReaction::LocalEquations< dim >::clear ( )

inline

◆ debug()

template<std::size_t dim>

void Dune::Copasi::DiffusionReaction::LocalEquations< dim >::debug ( ) const

inline

◆ forEachValue() [1/2]

template<std::size_t dim>

void Dune::Copasi::DiffusionReaction::LocalEquations< dim >::forEachValue	(	Codim< 0 >	,
		const std::function< void(std::string_view, const FieldVector< double, 1 > &, const FieldVector< double, dim > &)> &	apply
	)		const

inlineoverride

◆ forEachValue() [2/2]

template<std::size_t dim>

void Dune::Copasi::DiffusionReaction::LocalEquations< dim >::forEachValue	(	Codim< 1 >	,
		const std::function< void(std::string_view, const FieldVector< double, 1 > &, const FieldVector< double, dim - 1 > &)> &
	)		const

inlineoverridevirtual

Reimplemented from Dune::Copasi::LocalDomain< dim >.

◆ get_equation()

template<std::size_t dim>

template<class Tree >
requires Concept::CompartmentScalarLocalBasisNode<Tree> || Concept::MembraneScalarLocalBasisNode<Tree>

const auto & Dune::Copasi::DiffusionReaction::LocalEquations< dim >::get_equation ( const Tree & tree ) const

inline

◆ get_gradient()

template<std::size_t dim>

template<class Tree >
requires Concept::CompartmentScalarLocalBasisNode<Tree> || Concept::MembraneScalarLocalBasisNode<Tree>

auto & Dune::Copasi::DiffusionReaction::LocalEquations< dim >::get_gradient ( const Tree & tree )

inline

◆ get_value()

template<std::size_t dim>

template<class Tree >
requires Concept::CompartmentScalarLocalBasisNode<Tree> || Concept::MembraneScalarLocalBasisNode<Tree>

auto & Dune::Copasi::DiffusionReaction::LocalEquations< dim >::get_value ( const Tree & tree )

inline

◆ make()

template<std::size_t dim>

template<PDELab::Concept::LocalBasis LocalBasis, class CellDataGridView = typename LocalBasis::GlobalBasis::EntitySet, class CellDataType = double>

static std::unique_ptr< LocalEquations > Dune::Copasi::DiffusionReaction::LocalEquations< dim >::make	(	const LocalBasis &	lbasis,
		const ParameterTree &	eqs_cfg = `{}`,
		const ParameterTree &	domain_cfg = `{}`,
		std::shared_ptr< const FunctorFactory< dim > >	functor_factory = `nullptr`,
		std::shared_ptr< const CellData< CellDataGridView, CellDataType > >	grid_cell_data = `nullptr`,
		BitFlags< FactoryFalgs >	opts = `BitFlags<FactoryFalgs>::no_flags()`
	)

inlinestatic

◆ make_mass()

template<std::size_t dim>

template<class CellDataGridView , class CellDataType = double>

static std::unique_ptr< LocalEquations > Dune::Copasi::DiffusionReaction::LocalEquations< dim >::make_mass	(	const PDELab::Concept::LocalBasis auto &	lbasis,
		const ParameterTree &	eqs_cfg,
		const ParameterTree &	domain_cfg,
		std::shared_ptr< const FunctorFactory< dim > >	functor_factory,
		std::shared_ptr< const CellData< CellDataGridView, CellDataType > >	grid_cell_data
	)

inlinestatic

◆ make_stiffness()

template<std::size_t dim>

template<class CellDataGridView , class CellDataType = double>

static std::unique_ptr< LocalEquations > Dune::Copasi::DiffusionReaction::LocalEquations< dim >::make_stiffness	(	const PDELab::Concept::LocalBasis auto &	lbasis,
		const ParameterTree &	eqs_cfg,
		const ParameterTree &	domain_cfg,
		std::shared_ptr< const FunctorFactory< dim > >	functor_factory,
		std::shared_ptr< const CellData< CellDataGridView, CellDataType > >	grid_cell_data
	)

inlinestatic

◆ nodes()

template<std::size_t dim>

const auto & Dune::Copasi::DiffusionReaction::LocalEquations< dim >::nodes ( ) const

inline

◆ operator=() [1/2]

template<std::size_t dim>

LocalEquations & Dune::Copasi::DiffusionReaction::LocalEquations< dim >::operator= ( const LocalEquations< dim > & )

delete

◆ operator=() [2/2]

template<std::size_t dim>

LocalEquations & Dune::Copasi::DiffusionReaction::LocalEquations< dim >::operator= ( LocalEquations< dim > && )

delete

Member Data Documentation

◆ domain_deformation

template<std::size_t dim>

CompartmentVectorFunction Dune::Copasi::DiffusionReaction::LocalEquations< dim >::domain_deformation

The documentation for this class was generated from the following file:

dune/copasi/model/diffusion_reaction/local_equations.hh

Classes

Public Types

Public Member Functions

Static Public Member Functions

Public Attributes

Member Typedef Documentation

◆ CompartmentScalarFunction

◆ CompartmentVectorFunction

◆ MembraneScalarFunction

◆ MembraneVectorFunction

Constructor & Destructor Documentation

◆ LocalEquations() [1/2]

◆ LocalEquations() [2/2]

◆ ~LocalEquations()

Member Function Documentation

◆ clear()

◆ debug()

◆ forEachValue() [1/2]

◆ forEachValue() [2/2]

◆ get_equation()

◆ get_gradient()

◆ get_value()

◆ make()

◆ make_mass()

◆ make_stiffness()

◆ nodes()

◆ operator=() [1/2]

◆ operator=() [2/2]

Member Data Documentation

◆ domain_deformation