Community

A piece of software is nothing without who maintains it and who uses it. We all form the community that make this package to be useful around the globe.

DUNE​

DUNE, the Distributed and Unified Numerics Environment is a modular toolbox for solving partial differential equations (PDEs) with grid-based methods. It is the framework that DuneCopasi uses to assemble and solve the numerical problems. The very well designed DUNE grid has a tremendous influence on how DuneCopasi is designed.

Biological Cell Modelling​

In the biology community there is an effort to produce software that is able model spatio-temporal variations of molecule distributions in living cells. This project itself is an initiative of the COPASI developers to fill this gap for determinitic reaction networks.

Spatial Model Editor​

The Spatial Model Editor is a user friendly Graphical User Interface (GUI) for the Systems Biology Markup Language (SBML). The GUI is able to read and modify non-spatial SBML models into 2D spatial models and simulate them with DuneCopasi. A big advantage of this package is that is tailored specifically for biologists and is available with just a pair of clicks on the major plataforms.