Input Data

TIFF Images

Each key=value pair on the [model.data] section defines a Context-Dependet-Function with 2 arguments named as the key identifier. The corresponding value should contain the directory path for a 16-bit grayscale TIFF file. These function are permitted to be used on the initialization of spatial variables for the compartments (i.e. [model.<compartment>.initial]). For example, on the initialization of variables for the nucleus compartment, the following math expressions for u and v are valid.

[model.data]
fnc_1 = file_1.tiff
fnc_2 = file_2.tiff

[model.nucleus.initial]
u = fnc_1(x, y) + fnc_2( -x, -y)
v = 30 * fnc_1(x, t)

Out of domain behavior

If the resulting function is evaluated outside the domain of the TIFF image, the arguments will be clamped to the nearest valid point in the domain.